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Image Search Results
Journal: Frontiers in Oncology
Article Title: Identifying key transcription factors and immune infiltration in non-small-cell lung cancer using weighted correlation network and Cox regression analyses
doi: 10.3389/fonc.2023.1112020
Figure Lengend Snippet: The primers of select genes.
Article Snippet: Antibodies used in this study included Vimentin (#5741), SLUG (#9585), β-catenin (#8480), and Anti-rabbit Alexa Fluor ® 594 Conjugate (#8889) from Cell Signaling Technology and MMP9 (10375-2-AP), SNAI1 (13099-1-AP), SNAI3 (21350-1-AP), and
Techniques:
Journal: Frontiers in Oncology
Article Title: Identifying key transcription factors and immune infiltration in non-small-cell lung cancer using weighted correlation network and Cox regression analyses
doi: 10.3389/fonc.2023.1112020
Figure Lengend Snippet: Expression profile and survival analysis of 5 transcription factors (TFs) in NSCLC. (A) Expression profile of 5 TFs (SETDB2, SNAI3, SCML4, ZNF540, and ETV1) in LUAD. (B) Expression profile of 5 TFs (SETDB2, SNAI3, SCML4, ZNF540, and ETV1) in LUSC. (C) Kaplan–Meier analysis of 5 TFs (SETDB2, SNAI3, SCML4, ZNF540, and ETV1) using Affymetrix microarray data. (D) Kaplan–Meier analysis of 5 TFs (SETDB2, SNAI3, SCML4, ZNF540, and ETV1) using RNA-seq data. (E) Analysis of the 5-TFs protein interaction network.
Article Snippet: Antibodies used in this study included Vimentin (#5741), SLUG (#9585), β-catenin (#8480), and Anti-rabbit Alexa Fluor ® 594 Conjugate (#8889) from Cell Signaling Technology and MMP9 (10375-2-AP), SNAI1 (13099-1-AP), SNAI3 (21350-1-AP), and
Techniques: Expressing, Microarray, RNA Sequencing
Journal: Frontiers in Oncology
Article Title: Identifying key transcription factors and immune infiltration in non-small-cell lung cancer using weighted correlation network and Cox regression analyses
doi: 10.3389/fonc.2023.1112020
Figure Lengend Snippet: Validating the TFs phenotypes, functions, and expression in lung cancer. (A) SETDB2, SNAI3, SCML4, ZNF540, and ETV1 mRNA expression levels in the normal human bronchial epithelial cell line (BEAS-2B), lung adenocarcinoma cell lines (A549, HCC827, H1299, and H1975), and lung squamous cell lines (EPLC-272H, H226, H157, and H2170) using RT-qPCR. Blue box: normal human bronchial epithelial cell line (BEAS-2B). Red box: lung cancer cell lines. (B) The mRNA expression levels of SETDB2 and SNAI3 in the normal human bronchial epithelial cell line (BEAS-2B), lung adenocarcinoma cell lines (A549, HCC827, H1299, and H1975), and lung squamous cell lines (EPLC-272H, H226, H157, and H2170) using RT-qPCR. (C) EdU assays were performed in A549 cells infected with siCtrl, siSETDB2, and siSNAI3. siCtrl, siControl; siSE2, siSETDB2; siSN3, siSNAI3. (D) Wound healing experiments were performed in A549, HCC827, and H1299 transfected with siCtrl, siSETDB2, and siSNAI3. siCtrl, siControl; siSE2, siSETDB2; siSN3, siSNAI3. (E) Transwell invasion assays were performed on lung cancer cells (A549, HCC827, and H1299) infected with siCtrl, siSETDB2, and siSNAI3. siCtrl, siControl; siSE2, siSETDB2; siSN3, siSNAI3. (F) Immunofluorescence staining including MMP9, Vimentin, β-catenin, SNAI1 and SLUG was performed in A549 cells transfected with siCtrl, siSETDB2 and siSNAI3. Blue fluorescence of DAPI labeled cell nucleus, red fluorescence of labeled corresponding protein. siCtrl, siControl; siSE2, siSETDB2; siSN3, siSNAI3. MFI, mean fluorescence intensity. (G) The mRNA expression levels of metastatic markers (MMP9, Vimentin, β-catenin, SNAI1, and SLUG) as well as SNAI3 and SETDB2 were detected by RT-qPCR in A549 cells transfected with siCtrl, siSETDB2, and siSNAI3. siCtrl, siControl. (H) The protein levels of metastatic markers (MMP9, Vimentin, β-catenin, SNAI1, and SLUG) as well as SNAI3 and SETDB2 were detected by western blotting in A549 cells transfected with siCtrl, siSETDB2, and siSNAI3. siCtrl, siControl; siSE2, siSETDB2; siSN3, siSNAI3. (I) The mRNA expression levels of stem cell markers (SOX2, OCT4, and NANOG) in A549 cells transfected with siCtrl, siSETDB2, and siSNAI3 using RT-qPCR. siCtrl, siControl. (B-E, G, I) Error bar represents mean ± SD of three independent experiments. * p < 0.05, ** p < 0.01. Student’s t-test.
Article Snippet: Antibodies used in this study included Vimentin (#5741), SLUG (#9585), β-catenin (#8480), and Anti-rabbit Alexa Fluor ® 594 Conjugate (#8889) from Cell Signaling Technology and MMP9 (10375-2-AP), SNAI1 (13099-1-AP), SNAI3 (21350-1-AP), and
Techniques: Expressing, Quantitative RT-PCR, Infection, Transfection, Immunofluorescence, Staining, Fluorescence, Labeling, Western Blot